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software programs bioedit sequence alignment editor version 7.0.5.3  (Bioedit Company)

 
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    Structured Review

    Bioedit Company software programs bioedit sequence alignment editor version 7.0.5.3
    Software Programs Bioedit Sequence Alignment Editor Version 7.0.5.3, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/aligner+software+program/bioedit+software/bio_rxiv__2024__12__14__628494-57-25-10
    Average 90 stars, based on 1 article reviews
    software programs bioedit sequence alignment editor version 7.0.5.3 - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Sequencing:

    Article Title: Biopesticide Compounds from an Endolichenic Fungus Xylaria sp. Isolated from the Lichen Hypogymnia tubulosa
    Article Snippet: The amplicons were checked by agarose gel (1%) electrophoresis, purified using the EXO-SAP-IT kit (Affimetrix-USB; Thermo Fisher Scientific, Waltham, MA, USA), and sequenced on an AB 3500 Genetic Analyzer (Thermo Fisher Scientific, Waltham, MA, USA) at the University of La Laguna (La Laguna, Spain) genomic service. .. The consensus sequence of the rDNA ITS region was generated using the aligner software Bioedit (version 5.09; Tom Hall, Department of Microbiology, North Carolina State University, Raleigh, NC, USA) and compared with those published in the NCBI ( https://www.ncbi.nlm.nih.gov/ ) database by using the online BLAST program ( https://www.ncbi.nlm.nih.gov/BLAST , accessed on 29 May 2024). ..

    Article Title: Mycosynthesis of iron oxide nanoparticles using manglicolous fungi isolated from Indian sundarbans and its application for the treatment of chromium containing solution: Synthesis, adsorption isotherm, kinetics and thermodynamics study
    Article Snippet: The study describes mycosynthesis of iron oxide nanoparticles (IO-NPs) synthesized using manglicolous fungi isolated from Indian sundarbans which subsequently used for the treatment of Cr(VI) from synthetic waste water.. Cell Free Filtrate (CFF) of 5 isolated fungi was screened to identify their potentiality to hydrolyze the mixture of FeCl2 and FeCl3 salts for the production of IO-NPs.. The extracellular bio-reduction was observed by changes in the colour of CFF which was monitored by analysing the reaction mixture in UV-Vis Spectrophotometer.

    Article Title: Molecular characterization of a novel gammacarmovirus infecting cucurbits in India.
    Article Snippet: In this study, we describe the identification of a new gammacarmovirus infecting Cucurbita pepo plants showing a range of mosaic, stunting, yellowing, and wilting symptoms.. The virus had a narrow host range and mostly produced chlorotic and necrotic local lesions in the majority of the tested plants.. However, Nicotiana benthamiana showed systemic symptoms under laboratory conditions.

    Article Title: Biopesticide Compounds from an Endolichenic Fungus Xylaria sp. Isolated from the Lichen Hypogymnia tubulosa .
    Article Snippet: The amplicons were checked by agarose gel (1%) electrophoresis, purified using the EXO-SAP-IT kit (Affimetrix-USB; Thermo Fisher Scientific, Waltham, MA, USA), and sequenced on an AB 3500 Genetic Analyzer (Thermo Fisher Scientific, Waltham, MA, USA) at the University of La Laguna (La Laguna, Spain) genomic service. .. The consensus sequence of the rDNA ITS region was generated using the aligner software Bioedit (version 5.09; Tom Hall, Department of Microbiology, North Carolina State University, Raleigh, NC, USA) and Molecules 2025, 30, 470 10 of 15 compared with those published in the NCBI (https://www.ncbi.nlm.nih.gov/) database by using the online BLAST program (https://www.ncbi.nlm.nih.gov/BLAST, accessed on 29 May 2024). ..

    Generated:

    Article Title: Biopesticide Compounds from an Endolichenic Fungus Xylaria sp. Isolated from the Lichen Hypogymnia tubulosa
    Article Snippet: The amplicons were checked by agarose gel (1%) electrophoresis, purified using the EXO-SAP-IT kit (Affimetrix-USB; Thermo Fisher Scientific, Waltham, MA, USA), and sequenced on an AB 3500 Genetic Analyzer (Thermo Fisher Scientific, Waltham, MA, USA) at the University of La Laguna (La Laguna, Spain) genomic service. .. The consensus sequence of the rDNA ITS region was generated using the aligner software Bioedit (version 5.09; Tom Hall, Department of Microbiology, North Carolina State University, Raleigh, NC, USA) and compared with those published in the NCBI ( https://www.ncbi.nlm.nih.gov/ ) database by using the online BLAST program ( https://www.ncbi.nlm.nih.gov/BLAST , accessed on 29 May 2024). ..

    Article Title: Biopesticide Compounds from an Endolichenic Fungus Xylaria sp. Isolated from the Lichen Hypogymnia tubulosa .
    Article Snippet: The amplicons were checked by agarose gel (1%) electrophoresis, purified using the EXO-SAP-IT kit (Affimetrix-USB; Thermo Fisher Scientific, Waltham, MA, USA), and sequenced on an AB 3500 Genetic Analyzer (Thermo Fisher Scientific, Waltham, MA, USA) at the University of La Laguna (La Laguna, Spain) genomic service. .. The consensus sequence of the rDNA ITS region was generated using the aligner software Bioedit (version 5.09; Tom Hall, Department of Microbiology, North Carolina State University, Raleigh, NC, USA) and Molecules 2025, 30, 470 10 of 15 compared with those published in the NCBI (https://www.ncbi.nlm.nih.gov/) database by using the online BLAST program (https://www.ncbi.nlm.nih.gov/BLAST, accessed on 29 May 2024). ..

    Software:

    Article Title: Biopesticide Compounds from an Endolichenic Fungus Xylaria sp. Isolated from the Lichen Hypogymnia tubulosa
    Article Snippet: The amplicons were checked by agarose gel (1%) electrophoresis, purified using the EXO-SAP-IT kit (Affimetrix-USB; Thermo Fisher Scientific, Waltham, MA, USA), and sequenced on an AB 3500 Genetic Analyzer (Thermo Fisher Scientific, Waltham, MA, USA) at the University of La Laguna (La Laguna, Spain) genomic service. .. The consensus sequence of the rDNA ITS region was generated using the aligner software Bioedit (version 5.09; Tom Hall, Department of Microbiology, North Carolina State University, Raleigh, NC, USA) and compared with those published in the NCBI ( https://www.ncbi.nlm.nih.gov/ ) database by using the online BLAST program ( https://www.ncbi.nlm.nih.gov/BLAST , accessed on 29 May 2024). ..

    Article Title: Mycosynthesis of iron oxide nanoparticles using manglicolous fungi isolated from Indian sundarbans and its application for the treatment of chromium containing solution: Synthesis, adsorption isotherm, kinetics and thermodynamics study
    Article Snippet: The study describes mycosynthesis of iron oxide nanoparticles (IO-NPs) synthesized using manglicolous fungi isolated from Indian sundarbans which subsequently used for the treatment of Cr(VI) from synthetic waste water.. Cell Free Filtrate (CFF) of 5 isolated fungi was screened to identify their potentiality to hydrolyze the mixture of FeCl2 and FeCl3 salts for the production of IO-NPs.. The extracellular bio-reduction was observed by changes in the colour of CFF which was monitored by analysing the reaction mixture in UV-Vis Spectrophotometer.

    Article Title: Molecular characterization of a novel gammacarmovirus infecting cucurbits in India.
    Article Snippet: In this study, we describe the identification of a new gammacarmovirus infecting Cucurbita pepo plants showing a range of mosaic, stunting, yellowing, and wilting symptoms.. The virus had a narrow host range and mostly produced chlorotic and necrotic local lesions in the majority of the tested plants.. However, Nicotiana benthamiana showed systemic symptoms under laboratory conditions.

    Article Title: Biopesticide Compounds from an Endolichenic Fungus Xylaria sp. Isolated from the Lichen Hypogymnia tubulosa .
    Article Snippet: The amplicons were checked by agarose gel (1%) electrophoresis, purified using the EXO-SAP-IT kit (Affimetrix-USB; Thermo Fisher Scientific, Waltham, MA, USA), and sequenced on an AB 3500 Genetic Analyzer (Thermo Fisher Scientific, Waltham, MA, USA) at the University of La Laguna (La Laguna, Spain) genomic service. .. The consensus sequence of the rDNA ITS region was generated using the aligner software Bioedit (version 5.09; Tom Hall, Department of Microbiology, North Carolina State University, Raleigh, NC, USA) and Molecules 2025, 30, 470 10 of 15 compared with those published in the NCBI (https://www.ncbi.nlm.nih.gov/) database by using the online BLAST program (https://www.ncbi.nlm.nih.gov/BLAST, accessed on 29 May 2024). ..

    Clone Assay:

    Article Title: Molecular characterization of a novel gammacarmovirus infecting cucurbits in India.
    Article Snippet: In this study, we describe the identification of a new gammacarmovirus infecting Cucurbita pepo plants showing a range of mosaic, stunting, yellowing, and wilting symptoms.. The virus had a narrow host range and mostly produced chlorotic and necrotic local lesions in the majority of the tested plants.. However, Nicotiana benthamiana showed systemic symptoms under laboratory conditions.



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    Image Search Results


    A phylogenetic tree was generated using consensus hsp65 gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from this study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1H.1, 5H.1, 6H.1, 7H.1, 10H.1, 15H.1, 18H.1, 20H.1, 22H.1, 22H.2, 23H.1, 26H.1, 27H.1, and 27H.2.

    Journal: IJID Regions

    Article Title: Targeted deep sequencing of mycobacteria species from extrapulmonary sites not identified by routine line probe assays: A retrospective laboratory analysis of stored clinical cultures

    doi: 10.1016/j.ijregi.2024.100464

    Figure Lengend Snippet: A phylogenetic tree was generated using consensus hsp65 gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from this study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1H.1, 5H.1, 6H.1, 7H.1, 10H.1, 15H.1, 18H.1, 20H.1, 22H.1, 22H.2, 23H.1, 26H.1, 27H.1, and 27H.2.

    Article Snippet: The consensus sequences were subjected to analysis through the National Centre for Biotechnology Information nucleotide Basic Local Alignment Search Tool software program [ ].

    Techniques: Generated, Amplification, Sequencing, Labeling

    A phylogenetic tree was generated using consensus rpoB gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from the study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1R.1, 2R.1, 6R.1, 8R.1, 9R.1, 10R.1, 10R.2, 10R.3, 10R.4, 10R.5, 15R.1, 16R.1, 18R.1, 20R.1, 21R.1, 22R.1, 23R.1, 24R.1, 26R.1, 27R.1, 28R.1.

    Journal: IJID Regions

    Article Title: Targeted deep sequencing of mycobacteria species from extrapulmonary sites not identified by routine line probe assays: A retrospective laboratory analysis of stored clinical cultures

    doi: 10.1016/j.ijregi.2024.100464

    Figure Lengend Snippet: A phylogenetic tree was generated using consensus rpoB gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from the study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1R.1, 2R.1, 6R.1, 8R.1, 9R.1, 10R.1, 10R.2, 10R.3, 10R.4, 10R.5, 15R.1, 16R.1, 18R.1, 20R.1, 21R.1, 22R.1, 23R.1, 24R.1, 26R.1, 27R.1, 28R.1.

    Article Snippet: The consensus sequences were subjected to analysis through the National Centre for Biotechnology Information nucleotide Basic Local Alignment Search Tool software program [ ].

    Techniques: Generated, Amplification, Sequencing, Labeling